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  5. Solyc01g020190

Solyc01g020190


Description : LOW QUALITY:RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3 *-* AT4G32670.2)


Gene families : OG_42_0000370 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g020190
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Bradi2g28380 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 Orthogroups_2024-Update
Brara.F00952.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU1Hr1G059610.2 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os01g66970 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.013G126600 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Orthogroups_2024-Update
Solyc01g079530 No alias RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
MF GO:0005342 organic acid transmembrane transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
MF GO:0015171 amino acid transmembrane transporter activity IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 70 115
No external refs found!