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At5g08390


Description : Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]


Gene families : OG_42_0001613 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g08390
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g58130 No alias katanin p80 WD40 repeat-containing subunit B1 homolog 1,... 0.04 Orthogroups_2024-Update
MA_97731g0010 No alias (at5g23430 : 355.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
Sobic.001G207400.1 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
InterPro domains Description Start Stop
IPR028021 Katanin_C-terminal 677 832
IPR001680 WD40_repeat 53 87
IPR001680 WD40_repeat 175 213
IPR001680 WD40_repeat 9 44
IPR001680 WD40_repeat 93 129
IPR001680 WD40_repeat 135 171
No external refs found!