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  5. Mp3g04880.1

Mp3g04880.1


Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 186.0)


Gene families : OG_42_0000643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp3g04880.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
At5g15270 No alias RNA-binding KH domain-containing protein... 0.02 Orthogroups_2024-Update
Bradi2g08087 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
GRMZM2G158884 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.07G020300 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.07G182400 No alias RNA-binding KH domain-containing protein 0.02 Orthogroups_2024-Update
MA_6622g0010 No alias (at5g46190 : 163.0) RNA-binding KH domain-containing... 0.02 Orthogroups_2024-Update
PSME_00014646-RA No alias (at1g51580 : 281.0) RNA-binding KH domain-containing... 0.02 Orthogroups_2024-Update
Potri.004G123400 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Seita.9G207200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G253600.2 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004057 arginyltransferase activity IEP Predicted GO
MF GO:0004814 arginine-tRNA ligase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006420 arginyl-tRNA aminoacylation IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009235 cobalamin metabolic process IEP Predicted GO
BP GO:0009236 cobalamin biosynthetic process IEP Predicted GO
BP GO:0016598 protein arginylation IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 642 705
IPR004088 KH_dom_type_1 450 516
IPR004088 KH_dom_type_1 367 418
IPR004088 KH_dom_type_1 53 106
IPR004088 KH_dom_type_1 199 267
No external refs found!