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Description : Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q9FY87]
Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Arabidopsis release: At5g09280 | |
| Cluster | HCCA clusters: Cluster_211 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_25977 | No alias | pectate lyase | 0.03 | Orthogroups_2024-Update | |
| A4A49_26358 | No alias | putative pectate lyase p18 | 0.03 | Orthogroups_2024-Update | |
| A4A49_35755 | No alias | putative pectate lyase p59 | 0.03 | Orthogroups_2024-Update | |
| At2g02720 | No alias | Probable pectate lyase 6 [Source:UniProtKB/Swiss-Prot;Acc:O64510] | 0.03 | Orthogroups_2024-Update | |
| Brara.B00588.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.04 | Orthogroups_2024-Update | |
| Brara.F00890.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Brara.G02558.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Brara.I03611.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G323418 | No alias | Pectate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G020200 | No alias | Pectate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| LOC_Os06g38520 | No alias | pectate lyase family protein, expressed | 0.03 | Orthogroups_2024-Update | |
| PSME_00000524-RA | No alias | (at4g24780 : 590.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| Potri.001G052300 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.003G175900 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.008G182200 | No alias | Pectate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G322800.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
| Solyc02g080910 | No alias | Pectate lyase (AHRD V3.3 *** K4B9W1_SOLLC) | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
| MF | GO:0000287 | magnesium ion binding | IEP | Predicted GO |
| MF | GO:0003879 | ATP phosphoribosyltransferase activity | IEP | Predicted GO |
| BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| CC | GO:0031012 | extracellular matrix | IEP | Predicted GO |
| CC | GO:0044421 | extracellular region part | IEP | Predicted GO |
| BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 78 | 238 |
| No external refs found! |