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  5. Mp3g10740.1

Mp3g10740.1


Description : component Sm-D2 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG_42_0003055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003055_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp3g10740.1
Cluster HCAA Clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Glyma.20G204200 No alias Small nuclear ribonucleoprotein family protein 0.03 Orthogroups_2024-Update
Kfl00067_0020 kfl00067_0020_v1.1 (at3g62840 : 167.0) Small nuclear ribonucleoprotein... 0.02 Orthogroups_2024-Update
PSME_00013696-RA No alias (at3g62840 : 192.0) Small nuclear ribonucleoprotein... 0.02 Orthogroups_2024-Update
PSME_00046316-RA No alias (at3g62840 : 139.0) Small nuclear ribonucleoprotein... 0.03 Orthogroups_2024-Update
Pp1s288_45V6 No alias small nuclear ribonucleoprotein d2 0.03 Orthogroups_2024-Update
Seita.3G065200.1 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 Orthogroups_2024-Update
Seita.7G169200.1 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 Orthogroups_2024-Update
Sobic.006G149200.1 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 29 103
No external refs found!