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  5. At5g09450

At5g09450


Description : Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g09450
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
402120 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g49750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Bradi3g30100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.F01064.1 No alias RNA editing factor *(POCO) 0.05 Orthogroups_2024-Update
Brara.G02029.1 No alias RNA editing factor *(POCO) 0.07 Orthogroups_2024-Update
GRMZM2G160994 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
Glyma.08G176700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
Glyma.12G203800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00009444-RA No alias (at1g60770 : 343.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.013G132500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G036100 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
Seita.4G018800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.9G203100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G078100.1 No alias RNA editing factor *(POCO) 0.02 Orthogroups_2024-Update
Sobic.003G134000.2 No alias RNA editing factor *(POCO) 0.03 Orthogroups_2024-Update
Sobic.003G144000.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.010G018900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc06g005140 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc11g006380 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc12g020050 No alias DNA-binding protein DQ117941 0.04 Orthogroups_2024-Update
Sopen01g035710 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen06g001130 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g031410 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g002280 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen12g010730 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 193 238
IPR002885 Pentatricopeptide_repeat 158 185
IPR002885 Pentatricopeptide_repeat 336 363
No external refs found!