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  5. Mp3g11860.1

Mp3g11860.1


Description : component NOT1 of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002100_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp3g11860.1
Cluster HCAA Clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
440060 No alias transcription regulators 0.02 Orthogroups_2024-Update
At1g02080 No alias Transcription regulator [Source:UniProtKB/TrEMBL;Acc:F4HVV6] 0.03 Orthogroups_2024-Update
Bradi1g78550 No alias transcription regulators 0.02 Orthogroups_2024-Update
Bradi3g33190 No alias transcription regulators 0.04 Orthogroups_2024-Update
Cre14.g632950 No alias transcription regulators 0.02 Orthogroups_2024-Update
Glyma.03G118400 No alias transcription regulators 0.03 Orthogroups_2024-Update
HORVU1Hr1G054300.19 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.02 Orthogroups_2024-Update
HORVU4Hr1G088210.35 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.02 Orthogroups_2024-Update
LOC_Os10g40780 No alias CCR4-Not complex component, Not1domain containing... 0.02 Orthogroups_2024-Update
MA_42843g0010 No alias (at1g02080 : 1165.0) transcription regulators; FUNCTIONS... 0.03 Orthogroups_2024-Update
Seita.9G325500.1 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.06 Orthogroups_2024-Update
Sobic.001G299700.1 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
evm.model.tig00000767.19 No alias (at1g02080 : 377.0) transcription regulators; FUNCTIONS... 0.01 Orthogroups_2024-Update
evm.model.tig00000767.20 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0033643 host cell part IEP Predicted GO
CC GO:0033646 host intracellular part IEP Predicted GO
CC GO:0033647 host intracellular organelle IEP Predicted GO
CC GO:0033648 host intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
CC GO:0042025 host cell nucleus IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044217 other organism part IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032194 CNOT1_HEAT 477 627
IPR032191 CNOT1_CAF1_bind 1033 1252
IPR024557 CCR4-Not_Not1su_DUF3819 1366 1506
IPR007196 CCR4-Not_Not1_C 2104 2471
IPR032193 CNOT1_TTP_bind 663 828
No external refs found!