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  5. At5g09840

At5g09840


Description : Emb [Source:UniProtKB/TrEMBL;Acc:Q9FIC2]


Gene families : OG_42_0005415 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005415_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g09840
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
At5g64710 No alias Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGG2] 0.05 Orthogroups_2024-Update
Bradi4g41810 No alias Putative endonuclease or glycosyl hydrolase 0.05 Orthogroups_2024-Update
Glyma.17G127700 No alias Putative endonuclease or glycosyl hydrolase 0.05 Orthogroups_2024-Update
Seita.7G293500.1 No alias endoribonuclease *(MNU) 0.03 Orthogroups_2024-Update
Sobic.005G048600.1 No alias endoribonuclease *(MNU) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR021139 NYN_limkain-b1 72 207
IPR025605 OST-HTH/LOTUS_dom 742 797
IPR025605 OST-HTH/LOTUS_dom 284 347
IPR025677 OST-HTH-assoc_dom 622 692
No external refs found!