Mp3g15030.1

Description : chromatin remodeling factor (Iswi)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha: Mp3g15030.1
Cluster	HCAA Clusters: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
130534	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
A4A49_50225	No alias	chromatin structure-remodeling complex protein syd	0.03	Orthogroups_2024-Update
At3g06400	No alias	Chromatin-remodeling complex ATPase...	0.02	Orthogroups_2024-Update
Bradi1g18910	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
Bradi1g44177	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
Bradi2g12950	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
GRMZM2G097289	No alias	Homeotic gene regulator	0.03	Orthogroups_2024-Update
Glyma.02G281000	No alias	chromatin remodeling 5	0.03	Orthogroups_2024-Update
Glyma.04G062400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
Glyma.06G063400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
Glyma.07G252100	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
Glyma.10G250500	No alias	Homeotic gene regulator	0.05	Orthogroups_2024-Update
Glyma.11G004100	No alias	Homeotic gene regulator	0.03	Orthogroups_2024-Update
Glyma.13G215900	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
Glyma.14G033600	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
Glyma.17G022300	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
HORVU7Hr1G041450.33	No alias	SMARCA component *(SYD/BRM/MINU)	0.03	Orthogroups_2024-Update
LOC_Os01g27040	No alias	chromatin-remodeling complex ATPase chain, putative, expressed	0.02	Orthogroups_2024-Update
Pp1s360_39V6	No alias	syd atpase chromatin binding	0.02	Orthogroups_2024-Update
Seita.2G320900.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Seita.9G578200.1	No alias	chromatin remodeling factor *(ALC1)	0.02	Orthogroups_2024-Update
Sobic.003G163200.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.04	Orthogroups_2024-Update
Sobic.010G065300.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Solyc12g099910	No alias	chromatin remodeling 5 (AHRD V3.3 *** AT2G13370.3)	0.03	Orthogroups_2024-Update
Sopen01g029280	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
Sopen12g034530	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
evm.model.tig00000217.24	No alias	(at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update
evm.model.tig00000217.25	No alias	(at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in...	0.01	Orthogroups_2024-Update
evm.model.tig00020960.24	No alias	(at2g13370 : 202.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	16Dec
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	16Dec
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	16Dec
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	16Dec
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006508	proteolysis	IEP	Predicted GO
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0006771	riboflavin metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0008430	selenium binding	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	Predicted GO
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
BP	GO:0009231	riboflavin biosynthetic process	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
CC	GO:0033643	host cell part	IEP	Predicted GO
CC	GO:0033646	host intracellular part	IEP	Predicted GO
CC	GO:0033647	host intracellular organelle	IEP	Predicted GO
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0034243	regulation of transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
CC	GO:0042025	host cell nucleus	IEP	Predicted GO
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predicted GO
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Predicted GO
CC	GO:0044217	other organism part	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predicted GO
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR015194	ISWI_HAND-dom	836	918
IPR000330	SNF2_N	284	550
IPR015195	SLIDE	980	1090
IPR001650	Helicase_C	573	685

External Links

No external refs found!

Mp3g15030.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation