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Description : protein factor (NERD) of non-canonical RdDM pathway
Gene families : OG_42_0000694 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000694_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Marchantia polymorpha: Mp4g08690.1 | |
| Cluster | HCAA Clusters: Cluster_55 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi2g57107 | No alias | nucleic acid binding;zinc ion binding;DNA binding | 0.02 | Orthogroups_2024-Update | |
| Bradi3g30620 | No alias | nucleic acid binding;zinc ion binding;DNA binding | 0.02 | Orthogroups_2024-Update | |
| Bradi4g35977 | No alias | nucleic acid binding;zinc ion binding;DNA binding | 0.08 | Orthogroups_2024-Update | |
| Brara.B00288.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.I01063.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G408096 | No alias | nucleic acid binding;zinc ion binding;DNA binding | 0.02 | Orthogroups_2024-Update | |
| Glyma.04G008500 | No alias | nucleic acid binding;zinc ion binding;DNA binding | 0.02 | Orthogroups_2024-Update | |
| Glyma.06G008300 | No alias | nucleic acid binding;zinc ion binding;DNA binding | 0.03 | Orthogroups_2024-Update | |
| Glyma.11G074600 | No alias | DNA binding;zinc ion binding;nucleic acid... | 0.02 | Orthogroups_2024-Update | |
| Potri.007G016001 | No alias | DNA binding;zinc ion binding;nucleic acid... | 0.02 | Orthogroups_2024-Update | |
| Seita.5G315200.1 | No alias | protein factor (NERD) of non-canonical RdDM pathway | 0.03 | Orthogroups_2024-Update | |
| Seita.9G570500.1 | No alias | protein factor (NERD) of non-canonical RdDM pathway | 0.05 | Orthogroups_2024-Update | |
| Sobic.001G534700.1 | No alias | protein factor (NERD) of non-canonical RdDM pathway | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G293200.1 | No alias | protein factor (NERD) of non-canonical RdDM pathway | 0.03 | Orthogroups_2024-Update | |
| Sobic.009G142000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | 16Dec |
| MF | GO:0005515 | protein binding | IEA | 16Dec |
| MF | GO:0046872 | metal ion binding | IEA | 16Dec |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Predicted GO |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predicted GO |
| MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Predicted GO |
| MF | GO:0005215 | transporter activity | IEP | Predicted GO |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
| BP | GO:0006401 | RNA catabolic process | IEP | Predicted GO |
| BP | GO:0006402 | mRNA catabolic process | IEP | Predicted GO |
| BP | GO:0006772 | thiamine metabolic process | IEP | Predicted GO |
| BP | GO:0009228 | thiamine biosynthetic process | IEP | Predicted GO |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
| BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
| MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
| MF | GO:0042393 | histone binding | IEP | Predicted GO |
| BP | GO:0042723 | thiamine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042724 | thiamine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
| BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0065007 | biological regulation | IEP | Predicted GO |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
| No external refs found! |