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Description : pre-60S ribosomal subunit assembly factor (RPF1)
Gene families : OG_42_0005331 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005331_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Marchantia polymorpha: Mp4g09960.1 | |
| Cluster | HCAA Clusters: Cluster_79 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At4g01560 | No alias | AT4g01560/F11O4_6 [Source:UniProtKB/TrEMBL;Acc:Q9M125] | 0.02 | Orthogroups_2024-Update | |
| Cre04.g218850 | No alias | Ribosomal RNA processing Brix domain protein | 0.02 | Orthogroups_2024-Update | |
| Seita.4G026800.1 | No alias | pre-60S ribosomal subunit assembly factor *(RPF1) | 0.02 | Orthogroups_2024-Update | |
| Solyc11g066280 | No alias | Ribosome production factor 1 (AHRD V3.3 *** A0A0B2P1B3_GLYSO) | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00000405.29 | No alias | (at4g01560 : 280.0) maternal effect embryo arrest 49... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004386 | helicase activity | IEP | Predicted GO |
| MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | Predicted GO |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
| BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | Predicted GO |
| BP | GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process | IEP | Predicted GO |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
| MF | GO:0008144 | drug binding | IEP | Predicted GO |
| MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
| BP | GO:0009112 | nucleobase metabolic process | IEP | Predicted GO |
| BP | GO:0009116 | nucleoside metabolic process | IEP | Predicted GO |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Predicted GO |
| MF | GO:0016831 | carboxy-lyase activity | IEP | Predicted GO |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
| BP | GO:0019856 | pyrimidine nucleobase biosynthetic process | IEP | Predicted GO |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | Predicted GO |
| MF | GO:0070279 | vitamin B6 binding | IEP | Predicted GO |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007109 | Brix | 128 | 320 |
| No external refs found! |