1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At5g12250

At5g12250


Description : Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g12250
Cluster HCCA clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
79202 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
Bradi2g52790 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Glyma.03G124400 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
MA_72744g0010 No alias (q40665|tbb3_orysa : 805.0) Tubulin beta-3 chain (Beta-3... 0.04 Orthogroups_2024-Update
PSME_00001574-RA No alias (q76fs3|tbb6_orysa : 424.0) Tubulin beta-6 chain (Beta-6... 0.03 Orthogroups_2024-Update
Pp1s252_101V6 No alias tubulin beta 0.02 Orthogroups_2024-Update
Pp1s93_158V6 No alias tubulin beta 0.02 Orthogroups_2024-Update
Seita.9G148700.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Solyc03g025730 No alias Tubulin beta chain (AHRD V3.3 *** G7IAN2_MEDTR) 0.02 Orthogroups_2024-Update
Solyc06g035970 No alias Tubulin beta chain (AHRD V3.3 *** TBB_HORVU) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 382
No external refs found!