Description : Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYV3]
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Arabidopsis release: At5g13230 | |
Cluster | HCCA clusters: Cluster_201 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
415185 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
73641 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
97289 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
At5g40410 | No alias | Pentatricopeptide repeat-containing protein At5g40410,... | 0.03 | Orthogroups_2024-Update | |
Bradi1g47160 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G462417 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G073600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G052470.6 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
HORVU3Hr1G085770.2 | No alias | RNA editing factor *(CRR2) | 0.04 | Orthogroups_2024-Update | |
LOC_Os01g72930 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_7907g0020 | No alias | (at3g57430 : 717.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
MA_81514g0010 | No alias | (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00005244-RA | No alias | (at3g46790 : 286.0) Encodes a member of a PCMP (plant... | 0.04 | Orthogroups_2024-Update | |
PSME_00042876-RA | No alias | (at3g23330 : 160.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
Potri.010G241100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Sobic.010G189200.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Sobic.010G197400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Solyc02g079260 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Solyc02g088650 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen03g002990 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen03g034990 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
MF | GO:0005544 | calcium-dependent phospholipid binding | IEP | Predicted GO |
BP | GO:0006302 | double-strand break repair | IEP | Predicted GO |
MF | GO:0019899 | enzyme binding | IEP | Predicted GO |
MF | GO:0030145 | manganese ion binding | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 186 | 209 |
IPR002885 | Pentatricopeptide_repeat | 88 | 114 |
IPR002885 | Pentatricopeptide_repeat | 415 | 443 |
IPR002885 | Pentatricopeptide_repeat | 588 | 610 |
IPR002885 | Pentatricopeptide_repeat | 488 | 512 |
IPR002885 | Pentatricopeptide_repeat | 214 | 243 |
IPR002885 | Pentatricopeptide_repeat | 387 | 412 |
IPR032867 | DYW_dom | 687 | 811 |
IPR002885 | Pentatricopeptide_repeat | 312 | 359 |
IPR002885 | Pentatricopeptide_repeat | 514 | 561 |
No external refs found! |