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At5g13230


Description : Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LYV3]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g13230
Cluster HCCA clusters: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
415185 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
73641 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
At5g40410 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.03 Orthogroups_2024-Update
Bradi1g47160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G462417 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G073600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G052470.6 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU3Hr1G085770.2 No alias RNA editing factor *(CRR2) 0.04 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_7907g0020 No alias (at3g57430 : 717.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_81514g0010 No alias (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00005244-RA No alias (at3g46790 : 286.0) Encodes a member of a PCMP (plant... 0.04 Orthogroups_2024-Update
PSME_00042876-RA No alias (at3g23330 : 160.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.010G241100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Sobic.010G189200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g079260 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g034990 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 186 209
IPR002885 Pentatricopeptide_repeat 88 114
IPR002885 Pentatricopeptide_repeat 415 443
IPR002885 Pentatricopeptide_repeat 588 610
IPR002885 Pentatricopeptide_repeat 488 512
IPR002885 Pentatricopeptide_repeat 214 243
IPR002885 Pentatricopeptide_repeat 387 412
IPR032867 DYW_dom 687 811
IPR002885 Pentatricopeptide_repeat 312 359
IPR002885 Pentatricopeptide_repeat 514 561
No external refs found!