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  5. Mp5g03860.1

Mp5g03860.1


Description : DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica (sp|a3avh5|rh13_orysj : 583.0)


Gene families : OG_42_0007717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp5g03860.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
At3g16840 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Bradi5g15377 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Sopen09g033680 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 594 702
IPR011545 DEAD/DEAH_box_helicase_dom 310 529
No external refs found!