Description : core component Gar1 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex
Gene families : OG_42_0004887 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004887_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Marchantia polymorpha: Mp5g08210.1 | |
Cluster | HCAA Clusters: Cluster_90 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi4g15350 | No alias | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G047580.2 | No alias | core component *(GAR1) of H/ACA snoRNP RNA... | 0.03 | Orthogroups_2024-Update | |
LOC_Os11g37080 | No alias | h/ACA ribonucleoprotein complex subunit 1-like protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00026474-RA | No alias | (at3g03920 : 112.0) H/ACA ribonucleoprotein complex,... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | 16Dec |
BP | GO:0042254 | ribosome biogenesis | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
BP | GO:0009116 | nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
MF | GO:0043531 | ADP binding | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007504 | H/ACA_rnp_Gar1/Naf1 | 41 | 136 |
No external refs found! |