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  5. Mp5g15800.1

Mp5g15800.1


Description : component RRP43 of exosome EXO9 core complex


Gene families : OG_42_0005048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp5g15800.1
Cluster HCAA Clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G246800 No alias 3\'-5\'-exoribonuclease family protein 0.02 Orthogroups_2024-Update
Pp1s20_190V6 No alias exosome complex exonuclease rrp43 0.02 Orthogroups_2024-Update
evm.model.tig00020912.53 No alias (at1g60080 : 152.0) 3'-5'-exoribonuclease family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
CC GO:0032299 ribonuclease H2 complex IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 53 186
IPR015847 ExoRNase_PH_dom2 235 296
No external refs found!