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  5. Solyc03g114600

Solyc03g114600


Description : Alternaria stem canker resistance


Gene families : OG_42_0001012 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001012_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g114600
Cluster HCCA clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
At3g19260 No alias LOH2 [Source:UniProtKB/TrEMBL;Acc:A0A178VL39] 0.02 Orthogroups_2024-Update
Seita.1G304800.1 No alias ceramide synthase 0.03 Orthogroups_2024-Update
Sopen03g033670 No alias TLC domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0050080 malonyl-CoA decarboxylase activity IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006634 TLC-dom 74 280
No external refs found!