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At5g15300


Description : Pentatricopeptide repeat-containing protein At5g15300 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF2]


Gene families : OG_42_0010023 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g15300
Cluster HCCA clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G058133 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G086100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019627 urea metabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043419 urea catabolic process IEP Predicted GO
BP GO:0043605 cellular amide catabolic process IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 124
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 419 443
IPR002885 Pentatricopeptide_repeat 317 344
IPR002885 Pentatricopeptide_repeat 381 408
IPR002885 Pentatricopeptide_repeat 179 205
No external refs found!