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  5. Mp5g20420.1

Mp5g20420.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp5g20420.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Bradi3g09950 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.B01861.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp2g18610.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Pp1s466_14V6 No alias expansin 2 0.01 Orthogroups_2024-Update
Solyc07g063210 No alias Expansin (AHRD V3.3 *** G4XZZ0_9GENT) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 70 151
IPR007117 Expansin_CBD 162 238
No external refs found!