Mp5g20500.1


Description : SCD1 component of post-Golgi trafficking SCD complex


Gene families : OG_42_0005845 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005845_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp5g20500.1
Cluster HCAA Clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
Glyma.05G233100 No alias stomatal cytokinesis defective / SCD1 protein (SCD1) 0.02 Orthogroups_2024-Update
Pp1s6_61V6 No alias f-box and wd40 domain 0.02 Orthogroups_2024-Update
evm.model.tig00000157.21 No alias (at1g49040 : 84.0) Encodes soluble protein containing... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 921 956
IPR001680 WD40_repeat 867 914
IPR001680 WD40_repeat 960 997
IPR001680 WD40_repeat 1002 1039
IPR001680 WD40_repeat 1043 1079
IPR001680 WD40_repeat 1083 1120
IPR001194 cDENN_dom 130 313
IPR005113 uDENN_dom 42 110
No external refs found!