Description : DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]
Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Arabidopsis release: At5g15700 | |
Cluster | HCCA clusters: Cluster_122 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_39771 | No alias | dna-directed rna polymerase 3, chloroplastic | 0.02 | Orthogroups_2024-Update | |
Bradi4g08880 | No alias | DNA/RNA polymerases superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.B00618.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.03 | Orthogroups_2024-Update | |
Potri.004G111600 | No alias | DNA/RNA polymerases superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.018G103300 | No alias | DNA/RNA polymerases superfamily protein | 0.03 | Orthogroups_2024-Update | |
Pp1s246_118V6 | No alias | rna polymerase | 0.03 | Orthogroups_2024-Update | |
Sobic.002G378100.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.04 | Orthogroups_2024-Update | |
Sobic.010G211500.1 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) | 0.02 | Orthogroups_2024-Update | |
Sopen05g006460 | No alias | DNA-dependent RNA polymerase | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_511.3 | No alias | (at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN:... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00021493.48 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00021493.49 | No alias | (q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | InterProScan predictions |
BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0005991 | trehalose metabolic process | IEP | Predicted GO |
BP | GO:0005992 | trehalose biosynthetic process | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Predicted GO |
BP | GO:0006996 | organelle organization | IEP | Predicted GO |
BP | GO:0007030 | Golgi organization | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
BP | GO:0022406 | membrane docking | IEP | Predicted GO |
CC | GO:0034457 | Mpp10 complex | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044452 | nucleolar part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
BP | GO:0048278 | vesicle docking | IEP | Predicted GO |
BP | GO:0051640 | organelle localization | IEP | Predicted GO |
BP | GO:0140029 | exocytic process | IEP | Predicted GO |
BP | GO:0140056 | organelle localization by membrane tethering | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No external refs found! |