1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp6g06030.1

Mp6g06030.1


Description : pre-60S ribosomal subunit assembly factor (SSF1)


Gene families : OG_42_0005553 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005553_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp6g06030.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At5g61770 No alias PETER PAN-like protein [Source:UniProtKB/TrEMBL;Acc:F4K3M1] 0.02 Orthogroups_2024-Update
Bradi1g62800 No alias PETER PAN-like protein 0.04 Orthogroups_2024-Update
Brara.F02052.1 No alias pre-60S ribosomal subunit assembly factor *(SSF1) 0.05 Orthogroups_2024-Update
Potri.002G204900 No alias PETER PAN-like protein 0.02 Orthogroups_2024-Update
Pp1s22_59V6 No alias MAC9.8; Peter Pan - like protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.9G408900.1 No alias pre-60S ribosomal subunit assembly factor *(SSF1) 0.04 Orthogroups_2024-Update
Sobic.001G376400.1 No alias pre-60S ribosomal subunit assembly factor *(SSF1) 0.03 Orthogroups_2024-Update
Solyc01g096800 No alias PETER PAN-like protein (AHRD V3.3 *** AT5G61770.3) 0.03 Orthogroups_2024-Update
evm.model.contig_4461.11 No alias (at5g61770 : 211.0) PETER PAN-like protein (PPAN);... 0.04 Orthogroups_2024-Update
evm.model.tig00020912.43 No alias (at5g61770 : 80.1) PETER PAN-like protein (PPAN);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0098519 nucleotide phosphatase activity, acting on free nucleotides IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR007109 Brix 37 281
No external refs found!