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  5. Mp6g07700.1

Mp6g07700.1


Description : subunit 1 of Pol I RNA polymerase


Gene families : OG_42_0005280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005280_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp6g07700.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Brara.I03983.1 No alias component *(NRPA1) of RNA polymerase I complex 0.04 Orthogroups_2024-Update
Cre12.g529600 No alias nuclear RNA polymerase A1 0.02 Orthogroups_2024-Update
Sobic.009G217200.1 No alias component *(NRPA1) of RNA polymerase I complex 0.02 Orthogroups_2024-Update
Solyc10g080350 No alias DNA-directed RNA polymerase subunit (AHRD V3.3 *** K4D2S5_SOLLC) 0.02 Orthogroups_2024-Update
Sopen10g030910 No alias RNA polymerase Rpb1, domain 5 0.03 Orthogroups_2024-Update
evm.model.contig_4406.10 No alias (at3g57660 : 696.0) Encodes a subunit of RNA polymerase... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA 16Dec
BP GO:0006351 transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 459 651
IPR007081 RNA_pol_Rpb1_5 1000 1625
IPR007080 RNA_pol_Rpb1_1 7 457
IPR007066 RNA_pol_Rpb1_3 656 841
IPR007083 RNA_pol_Rpb1_4 898 993
No external refs found!