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  5. Mp6g12000.1

Mp6g12000.1


Description : DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica (sp|q0e2z7|rh41_orysj : 478.0)


Gene families : OG_42_0008691 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008691_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp6g12000.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Glyma.02G068300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
Pp1s62_132V6 No alias dead (asp-glu-ala-asp) box polypeptide 59 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030686 90S preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 529 630
IPR011545 DEAD/DEAH_box_helicase_dom 312 481
IPR007529 Znf_HIT 159 185
No external refs found!