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At5g17200


Description : Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FFI9]


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g17200
Cluster HCCA clusters: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Bradi2g18060 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.U005701 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 66 322
IPR000743 Glyco_hydro_28 347 408
No external refs found!