At5g17420

Description : Cellulose synthase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PV01]

Gene families : OG_42_0000159 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At5g17420
Cluster	HCCA clusters: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
75715	No alias	Cellulose synthase family protein	0.03	Orthogroups_2024-Update
A4A49_22443	No alias	cellulose synthase a catalytic subunit 8 [udp-forming]	0.03	Orthogroups_2024-Update
Bradi2g49912	No alias	cellulose synthase family protein	0.03	Orthogroups_2024-Update
Bradi3g28350	No alias	cellulose synthase A4	0.03	Orthogroups_2024-Update
Brara.B03915.1	No alias	catalytic component *(CesA) of cellulose synthase complex	0.03	Orthogroups_2024-Update
GRMZM2G011651	No alias	Cellulose synthase family protein	0.04	Orthogroups_2024-Update
Glyma.05G187300	No alias	cellulose synthase 6	0.03	Orthogroups_2024-Update
Glyma.09G103000	No alias	Cellulose synthase family protein	0.03	Orthogroups_2024-Update
LOC_Os09g25490	No alias	CESA9 - cellulose synthase, expressed	0.03	Orthogroups_2024-Update
MA_2908g0010	No alias	(at5g17420 : 481.0) Encodes a xylem-specific cellulose...	0.03	Orthogroups_2024-Update
PSME_00003324-RA	No alias	(at5g44030 : 1405.0) Encodes a cellulose synthase...	0.03	Orthogroups_2024-Update
PSME_00003722-RA	No alias	(at4g18780 : 1327.0) Encodes a member of the cellulose...	0.04	Orthogroups_2024-Update
PSME_00015179-RA	No alias	(at5g17420 : 1472.0) Encodes a xylem-specific cellulose...	0.05	Orthogroups_2024-Update
Seita.2G099400.1	No alias	catalytic component *(CesA) of cellulose synthase complex	0.03	Orthogroups_2024-Update
Seita.5G319100.1	No alias	catalytic component *(CesA) of cellulose synthase complex	0.03	Orthogroups_2024-Update
Sobic.001G224300.1	No alias	catalytic component *(CesA) of cellulose synthase complex	0.03	Orthogroups_2024-Update
Sobic.002G205500.1	No alias	catalytic component *(CesA) of cellulose synthase complex	0.04	Orthogroups_2024-Update
Sobic.003G296400.1	No alias	catalytic component *(CesA) of cellulose synthase complex	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008194	UDP-glycosyltransferase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016759	cellulose synthase activity	None	Extended
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEA	InterProScan predictions
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	IEA	InterProScan predictions
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035251	UDP-glucosyltransferase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006720	isoprenoid metabolic process	IEP	Predicted GO
BP	GO:0006721	terpenoid metabolic process	IEP	Predicted GO
BP	GO:0007010	cytoskeleton organization	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Predicted GO
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Predicted GO
BP	GO:0016114	terpenoid biosynthetic process	IEP	Predicted GO
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Predicted GO
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR027934	CES_Znf_RING	27	103
IPR005150	Cellulose_synth	317	1019

External Links

No external refs found!

At5g17420

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation