Mp7g12490.1

Description : component RPL40 of LSU proteome component

Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Marchantia polymorpha: Mp7g12490.1
Cluster	HCAA Clusters: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
101548	No alias	ubiquitin 5	0.02	Orthogroups_2024-Update
19615	No alias	polyubiquitin 10	0.03	Orthogroups_2024-Update
At2g36170	No alias	Ubiquitin-60S ribosomal protein L40-1...	0.02	Orthogroups_2024-Update
At3g52590	No alias	Ubiquitin-60S ribosomal protein L40-1...	0.04	Orthogroups_2024-Update
Bradi1g32460	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Bradi1g32700	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Bradi2g12280	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.02	Orthogroups_2024-Update
Bradi2g34750	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Bradi3g04730	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Bradi4g10327	No alias	polyubiquitin 10	0.02	Orthogroups_2024-Update
Bradi4g38540	No alias	ubiquitin extension protein 1	0.03	Orthogroups_2024-Update
Brara.C01815.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.C02349.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.E00858.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.G00981.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Brara.I03230.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.I03566.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.I04302.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Cre06.g273600	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.02	Orthogroups_2024-Update
Cre12.g491400	No alias	related to ubiquitin 1	0.01	Orthogroups_2024-Update
Glyma.01G029200	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Glyma.04G231500	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Orthogroups_2024-Update
Glyma.09G023700	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.05	Orthogroups_2024-Update
Glyma.15G129800	No alias	Ribosomal protein S27a / Ubiquitin family protein	0.03	Orthogroups_2024-Update
Glyma.19G195500	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.04	Orthogroups_2024-Update
HORVU1Hr1G023660.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Potri.012G024300	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.02	Orthogroups_2024-Update
Potri.014G115100	No alias	ubiquitin 6	0.02	Orthogroups_2024-Update
Pp1s184_64V6	No alias	ubiquitin extension protein	0.02	Orthogroups_2024-Update
Pp1s268_35V6	No alias	ubiquitin fusion protein	0.03	Orthogroups_2024-Update
Pp1s56_52V6	No alias	ubiquitin extension protein	0.02	Orthogroups_2024-Update
Seita.2G133700.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Seita.5G156000.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Seita.7G270700.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.001G444800.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.002G135200.1	No alias	component *(eL40) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Sobic.003G152600.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Sobic.009G054800.1	No alias	component *(eS31) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.010G210000.1	No alias	RUB ubiquitin-fold protein	0.02	Orthogroups_2024-Update
Solyc06g053210	No alias	Ubiquitin (AHRD V3.3 *** J7G5B5_ROSRU)	0.02	Orthogroups_2024-Update
Solyc12g098940	No alias	Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO)	0.03	Orthogroups_2024-Update
Sopen01g029970	No alias	Ubiquitin family	0.02	Orthogroups_2024-Update
Sopen08g031340	No alias	Ubiquitin family	0.03	Orthogroups_2024-Update
Sopen12g033690	No alias	Ubiquitin family	0.02	Orthogroups_2024-Update
evm.model.contig_3445.1	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Predicted GO
CC	GO:0000313	organellar ribosome	IEP	Predicted GO
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predicted GO
CC	GO:0000439	transcription factor TFIIH core complex	IEP	Predicted GO
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0003714	transcription corepressor activity	IEP	Predicted GO
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0004559	alpha-mannosidase activity	IEP	Predicted GO
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
CC	GO:0005761	mitochondrial ribosome	IEP	Predicted GO
CC	GO:0005815	microtubule organizing center	IEP	Predicted GO
BP	GO:0006289	nucleotide-excision repair	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
BP	GO:0006497	protein lipidation	IEP	Predicted GO
BP	GO:0006505	GPI anchor metabolic process	IEP	Predicted GO
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Predicted GO
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Predicted GO
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Predicted GO
BP	GO:0007010	cytoskeleton organization	IEP	Predicted GO
BP	GO:0007017	microtubule-based process	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
MF	GO:0015923	mannosidase activity	IEP	Predicted GO
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
MF	GO:0016859	cis-trans isomerase activity	IEP	Predicted GO
CC	GO:0017119	Golgi transport complex	IEP	Predicted GO
BP	GO:0018193	peptidyl-amino acid modification	IEP	Predicted GO
BP	GO:0018208	peptidyl-proline modification	IEP	Predicted GO
BP	GO:0022900	electron transport chain	IEP	Predicted GO
BP	GO:0022904	respiratory electron transport chain	IEP	Predicted GO
CC	GO:0030120	vesicle coat	IEP	Predicted GO
CC	GO:0030126	COPI vesicle coat	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0034453	microtubule anchoring	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044431	Golgi apparatus part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001975	Ribosomal_L40e	78	127
IPR000626	Ubiquitin_dom	3	74

External Links

No external refs found!

Mp7g12490.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation