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  5. Mp8g03290.1

Mp8g03290.1


Description : component RPS4 of SSU proteome


Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp8g03290.1
Cluster HCAA Clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
A4A49_10798 No alias 40s ribosomal protein s4 0.03 Orthogroups_2024-Update
A4A49_59874 No alias 40s ribosomal protein s4 0.03 Orthogroups_2024-Update
At5g07090 No alias 40S ribosomal protein S4-2... 0.02 Orthogroups_2024-Update
At5g58420 No alias 40S ribosomal protein S4-3... 0.02 Orthogroups_2024-Update
Brara.B00233.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.B01147.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Brara.C00278.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.J01227.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.J02486.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Cre06.g308250 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Orthogroups_2024-Update
GRMZM2G125271 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Orthogroups_2024-Update
Glyma.14G056900 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G021720.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Kfl00456_0140 kfl00456_0140_v1.1 (p46299|rs4_goshi : 404.0) 40S ribosomal protein S4 -... 0.02 Orthogroups_2024-Update
Pp1s38_194V6 No alias 40s ribosomal s4 protein 0.04 Orthogroups_2024-Update
Pp1s39_422V6 No alias 40s ribosomal s4 protein 0.03 Orthogroups_2024-Update
Seita.3G036600.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Seita.3G268400.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Sobic.001G018900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Sobic.003G160900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G115700.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Solyc02g070320 No alias No description available 0.04 Orthogroups_2024-Update
Solyc02g070330 No alias 40S ribosomal protein S4 (AHRD V3.3 *-* RS4_SOLTU) 0.02 Orthogroups_2024-Update
Solyc02g070340 No alias 40S ribosomal protein S4 (AHRD V3.3 *** RS4_SOLTU) 0.03 Orthogroups_2024-Update
Solyc02g070350 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g070360 No alias No description available 0.05 Orthogroups_2024-Update
Sopen02g019410 No alias Ribosomal family S4e 0.03 Orthogroups_2024-Update
Sopen02g019440 No alias Ribosomal family S4e 0.04 Orthogroups_2024-Update
Sopen02g019450 No alias Ribosomal family S4e 0.05 Orthogroups_2024-Update
evm.model.contig_832.1 No alias (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008193 tRNA guanylyltransferase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 95 169
IPR032277 40S_S4_C 212 256
IPR013843 Ribosomal_S4e_N 3 38
IPR002942 S4_RNA-bd 43 90
IPR005824 KOW 178 210
No external refs found!