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  5. Mp8g03800.1

Mp8g03800.1


Description : SSU processome assembly factor (RRP9/YAO1)


Gene families : OG_42_0006077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp8g03800.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At4g05410 No alias U3 snoRNP-associated protein-like YAO... 0.04 Orthogroups_2024-Update
Bradi4g01810 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.C02749.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.02 Orthogroups_2024-Update
Cre06.g278175 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G010440.3 No alias SSU processome assembly factor *(RRP9/YAO1) 0.02 Orthogroups_2024-Update
Kfl00603_0070 kfl00603_0070_v1.1 (at4g05410 : 283.0) Encodes a nucleolar protein with... 0.02 Orthogroups_2024-Update
Potri.007G107900 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.9G158600.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.07 Orthogroups_2024-Update
Sobic.001G157300.1 No alias SSU processome assembly factor *(RRP9/YAO1) 0.02 Orthogroups_2024-Update
Solyc02g069770 No alias WD40-repeat domain-contaning protein 0.05 Orthogroups_2024-Update
Sopen02g018930 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.tig00021179.21 No alias (at4g05410 : 272.0) Encodes a nucleolar protein with... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006474 N-terminal protein amino acid acetylation IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Predicted GO
BP GO:0018206 peptidyl-methionine modification IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Predicted GO
CC GO:0031417 NatC complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 224 253
IPR001680 WD40_repeat 302 336
IPR001680 WD40_repeat 340 376
IPR001680 WD40_repeat 258 295
No external refs found!