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  5. At5g22880

At5g22880


Description : Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F7]


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g22880
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
7113 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.03 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G091370.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update
Potri.009G028001 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Pp1s34_255V6 No alias histone h2b 0.02 Orthogroups_2024-Update
Seita.1G291600.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Seita.5G107300.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.03 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.02 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0004325 ferrochelatase activity IEP Predicted GO
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
BP GO:0019748 secondary metabolic process IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044550 secondary metabolite biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0046937 phytochelatin metabolic process IEP Predicted GO
BP GO:0046938 phytochelatin biosynthetic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 7 121
No external refs found!