At5g23260

Description : K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At5g23260
Cluster	HCCA clusters: Cluster_200

Target	Alias	Description	ECC score	Gene Family Method
A4A49_11564	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_14235	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_19521	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
At1g22130	No alias	Agamous-like MADS-box protein AGL104...	0.03	Orthogroups_2024-Update
At2g42830	No alias	K-box region and MADS-box transcription factor family...	0.03	Orthogroups_2024-Update
At5g60440	No alias	Agamous-like MADS-box protein AGL62...	0.04	Orthogroups_2024-Update
Brara.B03768.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.C00694.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.05	Orthogroups_2024-Update
Brara.D01509.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D02757.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E00310.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J00749.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
Glyma.01G064100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.09G266400	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
HORVU1Hr1G029220.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU1Hr1G047550.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
LOC_Os04g38780	No alias	transcription factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g01890	No alias	MADS-box transcription factor, putative, expressed	0.02	Orthogroups_2024-Update
Potri.001G328600	No alias	AGAMOUS-like 8	0.03	Orthogroups_2024-Update
Potri.009G055700	No alias	AGAMOUS-like 15	0.03	Orthogroups_2024-Update
Potri.010G154100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Seita.4G093200.1	No alias	MADS/AGL-type transcription factor	0.01	Orthogroups_2024-Update
Sobic.001G086500.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
Solyc06g059970	No alias	TPI	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004126	cytidine deaminase activity	IEP	Predicted GO
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Predicted GO
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0006216	cytidine catabolic process	IEP	Predicted GO
BP	GO:0006721	terpenoid metabolic process	IEP	Predicted GO
BP	GO:0006873	cellular ion homeostasis	IEP	Predicted GO
BP	GO:0006875	cellular metal ion homeostasis	IEP	Predicted GO
BP	GO:0006879	cellular iron ion homeostasis	IEP	Predicted GO
MF	GO:0008199	ferric iron binding	IEP	Predicted GO
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009164	nucleoside catabolic process	IEP	Predicted GO
BP	GO:0009972	cytidine deamination	IEP	Predicted GO
BP	GO:0016114	terpenoid biosynthetic process	IEP	Predicted GO
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0019239	deaminase activity	IEP	Predicted GO
BP	GO:0030003	cellular cation homeostasis	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Predicted GO
BP	GO:0042454	ribonucleoside catabolic process	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
BP	GO:0046087	cytidine metabolic process	IEP	Predicted GO
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Predicted GO
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Predicted GO
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Predicted GO
BP	GO:0048878	chemical homeostasis	IEP	Predicted GO
BP	GO:0050801	ion homeostasis	IEP	Predicted GO
BP	GO:0055065	metal ion homeostasis	IEP	Predicted GO
BP	GO:0055072	iron ion homeostasis	IEP	Predicted GO
BP	GO:0055076	transition metal ion homeostasis	IEP	Predicted GO
BP	GO:0055080	cation homeostasis	IEP	Predicted GO
BP	GO:0055082	cellular chemical homeostasis	IEP	Predicted GO
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Predicted GO
BP	GO:0098771	inorganic ion homeostasis	IEP	Predicted GO
BP	GO:1901658	glycosyl compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	98	181
IPR002100	TF_MADSbox	26	73

External Links

No external refs found!

At5g23260

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation