PSME_00034258-RA
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At5g23405


Description : High mobility group B protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q941D1]


Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g23405
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G145968 No alias high mobility group B3 0.03 Orthogroups_2024-Update
HORVU7Hr1G121390.3 No alias DNA bending architectural protein *(HMG-B) 0.02 Orthogroups_2024-Update
Pp1s106_177V6 No alias dna-binding protein 0.04 Orthogroups_2024-Update
Seita.6G001400.1 No alias DNA bending architectural protein *(HMG-B) 0.02 Orthogroups_2024-Update
Sopen02g027450 No alias HMG (high mobility group) box 0.03 Orthogroups_2024-Update
Sopen09g007460 No alias HMG (high mobility group) box 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 67 121
No external refs found!