At5g25390

Description : SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At5g25390
Cluster	HCCA clusters: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
38500	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
A4A49_06467	No alias	ethylene-responsive transcription factor crf4	0.03	Orthogroups_2024-Update
A4A49_16244	No alias	ethylene-responsive transcription factor rap2-11	0.04	Orthogroups_2024-Update
A4A49_21566	No alias	ethylene-responsive transcription factor erf087	0.03	Orthogroups_2024-Update
A4A49_24642	No alias	ethylene-responsive transcription factor rap2-11	0.03	Orthogroups_2024-Update
A4A49_42290	No alias	ethylene-responsive transcription factor rap2-4	0.03	Orthogroups_2024-Update
At5g13330	No alias	Rap2.6L [Source:UniProtKB/TrEMBL;Acc:A0A178UKL8]	0.03	Orthogroups_2024-Update
At5g43410	No alias	Ethylene-responsive transcription factor ERF096...	0.05	Orthogroups_2024-Update
Bradi3g12680	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Bradi5g24110	No alias	related to AP2 10	0.04	Orthogroups_2024-Update
Brara.A00880.1	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
Brara.B02236.1	No alias	subgroup ERF-IV/DREB2 transcription factor	0.03	Orthogroups_2024-Update
Brara.C00832.1	No alias	subgroup ERF-VIII transcription factor	0.03	Orthogroups_2024-Update
Brara.C03783.1	No alias	subgroup ERF-VIII transcription factor	0.03	Orthogroups_2024-Update
Brara.E00465.1	No alias	subgroup ERF-IX transcription factor	0.05	Orthogroups_2024-Update
Brara.E00471.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Brara.F01354.1	No alias	subgroup ERF-II transcription factor *(ERF16/17/18)	0.03	Orthogroups_2024-Update
Brara.I05089.1	No alias	subgroup ERF-VIII transcription factor	0.02	Orthogroups_2024-Update
Brara.J00058.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Glyma.01G074200	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Glyma.01G231200	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.02G261700	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Glyma.05G179900	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.05G228100	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Glyma.06G028300	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.06G064000	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.06G301300	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G216600	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.14G123900	No alias	cytokinin response factor 4	0.03	Orthogroups_2024-Update
Glyma.15G077000	No alias	ERF domain protein 12	0.03	Orthogroups_2024-Update
Glyma.17G114500	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.18G018200	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.20G172800	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.20G195900	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G082310.1	No alias	subgroup ERF-X transcription factor	0.03	Orthogroups_2024-Update
HORVU5Hr1G018720.1	No alias	transcription factor *(ERN1) & subgroup ERF-V...	0.03	Orthogroups_2024-Update
HORVU6Hr1G062380.3	No alias	subgroup ERF-IX transcription factor	0.03	Orthogroups_2024-Update
HORVU6Hr1G082880.1	No alias	subgroup ERF-VII transcription factor & transcription...	0.03	Orthogroups_2024-Update
LOC_Os01g21120	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g43790	No alias	ethylene-responsive transcription factor, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os05g36100	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g41760	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g40150	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os07g10410	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os09g26420	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
MA_65877g0010	No alias	(at3g16280 : 101.0) encodes a member of the DREB...	0.02	Orthogroups_2024-Update
PSME_00037533-RA	No alias	(at5g61890 : 108.0) encodes a member of the ERF...	0.03	Orthogroups_2024-Update
PSME_00037661-RA	No alias	(at4g17500 : 149.0) Encodes a member of the ERF...	0.03	Orthogroups_2024-Update
PSME_00056166-RA	No alias	(at5g11590 : 103.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
Potri.002G085600	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Potri.010G046600	No alias	DORNROSCHEN-like	0.03	Orthogroups_2024-Update
Potri.010G125600	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Pp1s15_186V6	No alias	transcriptional factor	0.02	Orthogroups_2024-Update
Seita.1G174700.1	No alias	subgroup ERF-VIII transcription factor	0.03	Orthogroups_2024-Update
Seita.2G364700.1	No alias	transcription factor *(ERN1) & subgroup ERF-V...	0.03	Orthogroups_2024-Update
Sobic.001G473900.1	No alias	subgroup ERF-I transcription factor	0.03	Orthogroups_2024-Update
Sobic.004G171300.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc01g090560	No alias	Ethylene-responsive transcription factor (AHRD V3.3 -...	0.03	Orthogroups_2024-Update
Solyc03g026270	No alias	CBF	0.03	Orthogroups_2024-Update
Solyc03g124110	No alias	CBF	0.03	Orthogroups_2024-Update
Solyc04g051360	No alias	Ethylene Response Factor D.1	0.04	Orthogroups_2024-Update
Solyc05g051180	No alias	Ethylene-responsive transcription factor (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc09g089910	No alias	Ethylene-responsive transcription factor (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Sopen02g022270	No alias	AP2 domain	0.04	Orthogroups_2024-Update
Sopen04g032240	No alias	AP2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
CC	GO:0030120	vesicle coat	IEP	Predicted GO
CC	GO:0030127	COPII vesicle coat	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
BP	GO:0048193	Golgi vesicle transport	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	6	48

External Links

No external refs found!

At5g25390

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation