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At5g25860


Description : Putative F-box/LRR-repeat protein At5g25860 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7J7]


Gene families : OG_42_0000608 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g25860
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
At3g44080 No alias Putative F-box/LRR-repeat protein At3g44080... 0.03 Orthogroups_2024-Update
At3g59190 No alias F-box/RNI-like superfamily protein... 0.04 Orthogroups_2024-Update
At3g62440 No alias SAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA18] 0.04 Orthogroups_2024-Update
At4g13960 No alias F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT4G13960] 0.04 Orthogroups_2024-Update
Brara.C04106.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01822.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Brara.H00020.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I04066.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04123.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04124.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I04823.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K01008.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G344300.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 16 47
No external refs found!