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  5. At5g27460

At5g27460


Description : Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g27460
Cluster HCCA clusters: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
A4A49_09367 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
A4A49_09610 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.04 Orthogroups_2024-Update
A4A49_29683 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.04 Orthogroups_2024-Update
At1g43010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
At3g11350 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.04 Orthogroups_2024-Update
Brara.A00849.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I01884.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G145130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g19529 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g35730 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
MA_87771g0010 No alias (at1g02150 : 108.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.006G197800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.011G120900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G351200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G051900.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen02g023200 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008146 sulfotransferase activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 169 223
IPR002885 Pentatricopeptide_repeat 358 384
IPR002885 Pentatricopeptide_repeat 322 346
No external refs found!