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  5. At5g27670

At5g27670


Description : Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178UFF2]


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g27670
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Brara.C01065.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.E02150.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.F02852.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Cre06.g274800 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.04 Orthogroups_2024-Update
Glyma.12G215500 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.15G040400 No alias histone H2A 12 0.02 Orthogroups_2024-Update
HORVU6Hr1G092390.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100400.2 No alias histone *(H2A) 0.01 Orthogroups_2024-Update
MA_962778g0010 No alias (q2hu68|h2a1_medtr : 184.0) Probable histone H2A.1 -... 0.03 Orthogroups_2024-Update
Mp3g02370.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
Solyc01g099410 No alias Histone H2A (AHRD V3.3 *** G8IIJ5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g074300 No alias Histone H2A (AHRD V3.3 *** K4CV07_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g073250 No alias Histone H2A (AHRD V3.3 *** K4DB31_SOLLC) 0.03 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen09g005140 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen09g031570 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004399 histidinol dehydrogenase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004817 cysteine-tRNA ligase activity IEP Predicted GO
CC GO:0005747 mitochondrial respiratory chain complex I IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0030964 NADH dehydrogenase complex IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0045271 respiratory chain complex I IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0070567 cytidylyltransferase activity IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 102 135
IPR007125 Histone_H2A/H2B/H3 4 99
No external refs found!