At5g35530


Description : 40S ribosomal protein S3-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJA6]


Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g35530
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
A4A49_00336 No alias 40s ribosomal protein s3-3 0.03 Orthogroups_2024-Update
Bradi3g16150 No alias Ribosomal protein S3 family protein 0.03 Orthogroups_2024-Update
Brara.C01612.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.C01619.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.D01897.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.D01899.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Cre02.g102250 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
GRMZM2G074300 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
Glyma.10G133100 No alias Ribosomal protein S3 family protein 0.03 Orthogroups_2024-Update
Glyma.20G083300 No alias Ribosomal protein S3 family protein 0.04 Orthogroups_2024-Update
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00040312-RA No alias (at5g35530 : 390.0) Ribosomal protein S3 family protein;... 0.03 Orthogroups_2024-Update
Potri.006G222100 No alias Ribosomal protein S3 family protein 0.05 Orthogroups_2024-Update
Pp1s127_74V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s29_222V6 No alias 40s ribosomal protein 0.05 Orthogroups_2024-Update
Pp1s31_178V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s41_146V6 No alias 40s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s454_3V6 No alias 40s ribosomal protein 0.04 Orthogroups_2024-Update
Seita.2G385700.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Seita.6G050300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.002G371100.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.007G053300.1 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Solyc07g041310 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.05 Orthogroups_2024-Update
Solyc08g061850 No alias Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1) 0.06 Orthogroups_2024-Update
Sopen07g020630 No alias Ribosomal protein S3, C-terminal domain 0.06 Orthogroups_2024-Update
Sopen08g017410 No alias Ribosomal protein S3, C-terminal domain 0.06 Orthogroups_2024-Update
Sopen08g017480 No alias Ribosomal protein S3, C-terminal domain 0.08 Orthogroups_2024-Update
evm.model.contig_2149.7 No alias (at5g35530 : 302.0) Ribosomal protein S3 family protein;... 0.06 Orthogroups_2024-Update
evm.model.tig00021462.41 No alias (at2g31610 : 358.0) Ribosomal protein S3 family protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019211 phosphatase activator activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 20 93
IPR001351 Ribosomal_S3_C 106 188
No external refs found!