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At5g37900


Description : TRAF-like superfamily protein [Source:TAIR;Acc:AT5G37900]


Gene families : OG_42_0000590 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000590_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g37900
Cluster HCCA clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
Bradi5g07216 No alias Protein with RING/U-box and TRAF-like domains 0.03 Orthogroups_2024-Update
Brara.E01238.1 No alias E3 ubiquitin ligase *(SINA) 0.03 Orthogroups_2024-Update
Brara.G01016.1 No alias E3 ubiquitin ligase *(SINA) 0.03 Orthogroups_2024-Update
Brara.G01420.1 No alias E3 ubiquitin ligase *(SINA) 0.03 Orthogroups_2024-Update
HORVU3Hr1G005320.2 No alias E3 ubiquitin ligase *(SINA) 0.02 Orthogroups_2024-Update
Potri.017G122800 No alias Protein with RING/U-box and TRAF-like domains 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA InterProScan predictions
BP GO:0007275 multicellular organism development IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 50 223
No external refs found!