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  5. Solyc03g116360

Solyc03g116360


Description : Regulator of chromosome condensation (RCC1) family protein (AHRD V3.3 *** G7K368_MEDTR)


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g116360
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
At5g12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Orthogroups_2024-Update
Glyma.09G278400 No alias Regulator of chromosome condensation (RCC1) family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
MF GO:0004451 isocitrate lyase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016833 oxo-acid-lyase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027988 BRX_N 904 934
IPR000306 Znf_FYVE 653 712
IPR000408 Reg_chr_condens 319 366
IPR000408 Reg_chr_condens 492 538
IPR000408 Reg_chr_condens 542 588
IPR000408 Reg_chr_condens 426 474
IPR000408 Reg_chr_condens 371 422
IPR000408 Reg_chr_condens 595 642
No external refs found!