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  5. At5g39850

At5g39850


Description : 40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]


Gene families : OG_42_0001595 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g39850
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Brara.J01972.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre08.g359750 No alias Ribosomal protein S4 0.02 Orthogroups_2024-Update
HORVU5Hr1G038920.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Pp1s223_95V6 No alias 40s ribosomal protein s9 0.04 Orthogroups_2024-Update
Seita.3G361100.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G384700.2 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc01g010540 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.02 Orthogroups_2024-Update
Solyc04g005680 No alias Ribosomal protein (AHRD V3.3 *** B3TM27_ELAGV) 0.04 Orthogroups_2024-Update
Solyc05g007250 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.04 Orthogroups_2024-Update
Sopen01g006190 No alias Ribosomal protein S4/S9 N-terminal domain 0.03 Orthogroups_2024-Update
Sopen01g006230 No alias Ribosomal protein S4/S9 N-terminal domain 0.03 Orthogroups_2024-Update
Sopen04g001730 No alias Ribosomal protein S4/S9 N-terminal domain 0.03 Orthogroups_2024-Update
Sopen05g003210 No alias Ribosomal protein S4/S9 N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.contig_2502.7 No alias (at5g15200 : 244.0) Ribosomal protein S4; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predicted GO
BP GO:0001932 regulation of protein phosphorylation IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019211 phosphatase activator activity IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019900 kinase binding IEP Predicted GO
MF GO:0019901 protein kinase binding IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0042325 regulation of phosphorylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043549 regulation of kinase activity IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0045859 regulation of protein kinase activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051338 regulation of transferase activity IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 12 64
IPR002942 S4_RNA-bd 109 153
No external refs found!