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  5. At5g39980

At5g39980


Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FLD8]


Gene families : OG_42_0008364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008364_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g39980
Cluster HCCA clusters: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
PSME_00056052-RA No alias (at5g39980 : 728.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Potri.017G075700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000940 condensed chromosome outer kinetochore IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005874 microtubule IEP Predicted GO
CC GO:0005876 spindle microtubule IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
CC GO:0099080 supramolecular complex IEP Predicted GO
CC GO:0099081 supramolecular polymer IEP Predicted GO
CC GO:0099512 supramolecular fiber IEP Predicted GO
CC GO:0099513 polymeric cytoskeletal fiber IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 399 442
IPR002885 Pentatricopeptide_repeat 258 303
IPR002885 Pentatricopeptide_repeat 153 201
IPR002885 Pentatricopeptide_repeat 577 602
IPR002885 Pentatricopeptide_repeat 538 566
IPR002885 Pentatricopeptide_repeat 471 497
IPR002885 Pentatricopeptide_repeat 226 256
IPR002885 Pentatricopeptide_repeat 328 377
No external refs found!