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  5. At5g40410

At5g40410


Description : Pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FND6]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g40410
Cluster HCCA clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
411 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.04 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.05 Orthogroups_2024-Update
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Orthogroups_2024-Update
At4g14170 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.04 Orthogroups_2024-Update
At5g13230 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At5g39680 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.05 Orthogroups_2024-Update
Bradi1g20737 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G001466 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G022884 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G170896 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.03G264700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G158200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G203500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G289802 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G088000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G061600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G001100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G091951 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G093800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G026000 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.19G090900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G061600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G114390.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g64370 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g39910 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os12g08140 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_10164206g0010 No alias (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_153011g0010 No alias (at5g52630 : 607.0) Encodes a member of the DYW... 0.03 Orthogroups_2024-Update
MA_230261g0010 No alias (at4g13650 : 756.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_474261g0010 No alias (at3g12770 : 471.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_615077g0010 No alias (at3g12770 : 607.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_771696g0010 No alias (at1g20230 : 490.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00006196-RA No alias (at1g11290 : 685.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00015055-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00034399-RA No alias (at4g33170 : 426.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00042881-RA No alias (at4g37170 : 685.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Potri.012G080200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.013G006700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G152000 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
Potri.017G084900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G244200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G424500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G356100.1 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
Solyc02g069500 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 474 597
IPR002885 Pentatricopeptide_repeat 299 347
IPR002885 Pentatricopeptide_repeat 96 144
IPR002885 Pentatricopeptide_repeat 374 399
IPR002885 Pentatricopeptide_repeat 274 296
IPR002885 Pentatricopeptide_repeat 173 195
IPR002885 Pentatricopeptide_repeat 201 228
No external refs found!