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  5. Solyc03g116580

Solyc03g116580


Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G80170.1)


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g116580
Cluster HCCA clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
Bradi2g18050 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.13G364700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.U005701 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc03g113230 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G23460.2) 0.03 Orthogroups_2024-Update
Sopen03g032290 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 238 524
IPR010417 Embryo-specific_ATS3 47 167
No external refs found!