1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At5g40880

At5g40880


Description : Uncharacterized protein At5g40880 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVR8]


Gene families : OG_42_0000910 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000910_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g40880
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G079180.1 No alias regulatory protein of RNA homeostasis 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 182 215
IPR001680 WD40_repeat 302 338
IPR001680 WD40_repeat 343 377
IPR000571 Znf_CCCH 146 170
No external refs found!