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  5. At5g44800

At5g44800


Description : PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g44800
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
164481 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
440203 No alias chromatin-remodeling protein 11 0.04 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Bradi1g78440 No alias SNF2 domain-containing protein / helicase... 0.02 Orthogroups_2024-Update
Bradi2g35740 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Brara.I00942.1 No alias CHD1-type chromatin remodeling factor *(CHR5) &... 0.02 Orthogroups_2024-Update
GRMZM2G049168 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.08G086100 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.03 Orthogroups_2024-Update
Glyma.15G097000 No alias chromatin remodeling factor17 0.03 Orthogroups_2024-Update
Glyma.17G023600 No alias chromatin remodeling factor17 0.03 Orthogroups_2024-Update
Kfl00045_0020 kfl00045_0020_v1.1 (at2g25170 : 947.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.03 Orthogroups_2024-Update
LOC_Os03g01200 No alias SNF2 family N-terminal domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
PSME_00001593-RA No alias (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update
PSME_00009907-RA No alias (at2g25170 : 144.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update
PSME_00020446-RA No alias (at2g44980 : 160.0) SNF2 domain-containing protein /... 0.02 Orthogroups_2024-Update
Potri.014G056700 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update
Pp1s223_99V6 No alias chromodomain helicase dna binding protein 5 0.03 Orthogroups_2024-Update
Pp1s235_76V6 No alias chromatin remodeling complex subunit 0.03 Orthogroups_2024-Update
Seita.2G419600.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.05 Orthogroups_2024-Update
Seita.6G108300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
Solyc08g029130 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
evm.model.tig00000217.25 No alias (at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in... 0.01 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00021623.13 No alias (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 1009 1119
IPR000330 SNF2_N 704 982
IPR019787 Znf_PHD-finger 78 121
IPR009463 DUF1087 1303 1341
IPR023780 Chromo_domain 602 653
No external refs found!