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At5g48910


Description : Pentatricopeptide repeat-containing protein At5g48910 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI80]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g48910
Cluster HCCA clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At3g05240 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Glyma.09G286100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
PSME_00031408-RA No alias (at4g30700 : 283.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00046485-RA No alias (at4g18750 : 683.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Seita.1G334200.1 No alias RNA editing factor *(CLB19) 0.05 Orthogroups_2024-Update
Seita.5G361000.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
Seita.7G293800.1 No alias RNA editing factor *(REME2/PGL1) 0.05 Orthogroups_2024-Update
Sobic.010G097700.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 512 636
IPR002885 Pentatricopeptide_repeat 413 437
IPR002885 Pentatricopeptide_repeat 480 508
IPR002885 Pentatricopeptide_repeat 339 386
IPR002885 Pentatricopeptide_repeat 238 281
No external refs found!