1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At5g53130

At5g53130


Description : Cyclic nucleotide-gated ion channel 1 [Source:UniProtKB/Swiss-Prot;Acc:O65717]


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g53130
Cluster HCCA clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Bradi4g37740 No alias cyclic nucleotide-gated channel 14 0.04 Orthogroups_2024-Update
Brara.C03656.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.06 Orthogroups_2024-Update
GRMZM2G074317 No alias Cyclic nucleotide-regulated ion channel family protein 0.03 Orthogroups_2024-Update
GRMZM2G078781 No alias cyclic nucleotide-gated cation channel 4 0.04 Orthogroups_2024-Update
Glyma.03G257000 No alias cyclic nucleotide gated channel 1 0.03 Orthogroups_2024-Update
Glyma.09G168700 No alias cyclic nucleotide-binding transporter 1 0.05 Orthogroups_2024-Update
HORVU5Hr1G065950.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.05 Orthogroups_2024-Update
Potri.017G067000 No alias cyclic nucleotide-gated channel 16 0.03 Orthogroups_2024-Update
Potri.017G089900 No alias Cyclic nucleotide-regulated ion channel family protein 0.03 Orthogroups_2024-Update
Pp1s211_70V6 No alias T3B23.7; cyclic nucleotide-regulated ion channel,... 0.03 Orthogroups_2024-Update
Pp1s90_245V6 No alias cyclic nucleotide-gated ion 0.03 Orthogroups_2024-Update
Seita.3G390700.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
Seita.9G156700.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.06 Orthogroups_2024-Update
Sobic.001G155100.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 507 597
IPR005821 Ion_trans_dom 94 413
No external refs found!