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At5g53180


Description : Polypyrimidine tract-binding protein homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGL9]


Gene families : OG_42_0002256 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002256_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g53180
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Bradi2g43760 No alias polypyrimidine tract-binding protein 2 0.03 Orthogroups_2024-Update
Glyma.14G159800 No alias polypyrimidine tract-binding protein 2 0.02 Orthogroups_2024-Update
Potri.015G020800 No alias polypyrimidine tract-binding protein 2 0.03 Orthogroups_2024-Update
Pp1s326_1V6 No alias polypyrimidine tract binding 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 22 72
IPR021790 DUF3355 243 321
No external refs found!