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  5. At5g53550

At5g53550


Description : YSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178U7D6]


Gene families : OG_42_0000320 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000320_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g53550
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
At3g17650 No alias Probable metal-nicotianamine transporter YSL5... 0.04 Orthogroups_2024-Update
Brara.A01415.1 No alias iron chelator transporter *(YSL) & ferric... 0.03 Orthogroups_2024-Update
Glyma.06G133000 No alias YELLOW STRIPE like 3 0.03 Orthogroups_2024-Update
Glyma.10G172900 No alias YELLOW STRIPE like 1 0.03 Orthogroups_2024-Update
HORVU6Hr1G061450.4 No alias iron chelator transporter *(YSL) & ferric... 0.02 Orthogroups_2024-Update
PSME_00004864-RA No alias (at1g65730 : 904.0) Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00027771-RA No alias (at1g65730 : 877.0) Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00037955-RA No alias (at3g17650 : 686.0) Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Potri.001G327300 No alias YELLOW STRIPE like 6 0.03 Orthogroups_2024-Update
Sobic.005G124600.1 No alias iron chelator transporter *(YSL) & ferric... 0.03 Orthogroups_2024-Update
Sobic.006G152500.1 No alias iron chelator transporter *(YSL) & ferric... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
InterPro domains Description Start Stop
IPR004813 OPT 41 655
No external refs found!