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At5g53640


Description : CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana /.../n match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G53635.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G53640]


Gene families : OG_42_0000773 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000773_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g53640
Cluster HCCA clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
At1g60400 No alias F-box protein At1g60400 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFI4] 0.03 Orthogroups_2024-Update
At5g44980 No alias F-box/FBD/LRR-repeat protein At5g44980... 0.04 Orthogroups_2024-Update
At5g53840 No alias F-box/FBD/LRR-repeat protein At5g53840... 0.03 Orthogroups_2024-Update
Brara.E02065.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J01457.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 166 191
IPR001810 F-box_dom 30 58
No external refs found!